#
#	archived
#
#snps_in_region                 --config ini_files/filter_snps.nod_from_bac.bac_700bp_alignable_callable.ini   	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_bac.bac_700bp_alignable.ini            	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_bac.bac_callable.ini                   	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_bac.bac_uncallable.ini                 	    $@  
#snps_in_region_per_vcf_strain  --config ini_files/filter_snps.nod_from_vcf.bac_700bp_alignable_callable.ini   	    $@  
#snps_in_region_per_vcf_strain  --config ini_files/filter_snps.nod_from_vcf.bac_700bp_alignable.ini            	    $@  
#snps_in_region_per_vcf_strain  --config ini_files/filter_snps.nod_from_vcf.bac_callable.ini                   	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_bac.bac.ini                            	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_dbsnp.bac_callable.ini                 	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_perlegen.bac_callable.ini              	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_dbsnp.bac.ini                          	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_perlegen.bac.ini                       	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_xiang1.bac_callable.ini                	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_xiang2.bac_callable.ini                	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_xiang3.bac_callable.ini                	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_xiang4.bac_callable.ini                	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_xiang5.bac_callable.ini                	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_xiang6.bac_callable.ini                	    $@  
#snps_in_region_per_vcf_strain  --config ini_files/filter_snps.nzo_from_vcf.bac_callable.ini                   	    $@  
#snps_in_region_per_vcf_strain  --config ini_files/filter_snps.nod_from_vcf.no_indels.bac_callable.ini         	    $@  
#snps_in_region_per_vcf_strain  --config ini_files/filter_snps.nod_from_vcf.no_repeats.bac_callable.ini        	    $@  
#snps_in_region_per_vcf_strain  --config ini_files/filter_snps.nod_from_vcf.no_repeats_indels.bac_callable.ini      $@  
#snps_in_region                 --config ini_files/filter_snps.any_strain_perlegen.bac_callable.ini                 $@  
#snps_in_region                 --config ini_files/filter_snps.any_strain_perlegen.bac.ini               	    $@  
#snps_in_region                  --config ini_files/filter_snps.nod_from_sanger_bac.bac_700bp_alignable_callable.ini $@  
#snps_in_region                  --config ini_files/filter_snps.nod_from_sanger_bac.bac_callable.ini                 $@  


#snps_in_region_per_vcf_strain  --config ini_files/filter_snps.nod_from_vcf.bac_final_callable.ini                   	    $@  
snps_in_region                  --config ini_files/filter_snps.nod_from_vcf.bac_final_callable.ini                          $@
snps_in_region_per_vcf_strain   --config ini_files/filter_snps.nod_from_vcf.bac_final_callable.2.ini                          $@
snps_in_region_per_vcf_strain   --config ini_files/filter_snps.nod_from_vcf.bac_final_callable.3.ini                          $@
#snps_in_region                 --config ini_files/filter_snps.nod_from_bac.bac_final_callable.ini                   	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_bac.bac_final_callable.ini                   	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_bac.bac_final_callable.ini                   	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_bac.bac_final_uncallable.ini                 	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_dbsnp.bac_final_callable.ini                 	    $@  
#snps_in_region                 --config ini_files/filter_snps.nod_from_perlegen.bac_final_callable.ini              	    $@  

